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@snijderlab

snijderlab

Research lab under @joostsnijder at the @UtrechtUniversity.

Snijderlab

Part of the research group Biomolecular Mass Spectrometry and Proteomics under professor Albert J. R. Heck in the Chemistry Department of Utrecht Univeristy, the Netherlands.

The lab of Joost Snijder combining techniques to study viruses and their host interactions. The techniques used the most are mass spectroscopy and cryo-em microscopy. This github organisation is how we organise our code. The code is mainly centred around the tool Stitch which is used for antibody de novo sequencing with bottom up mass spectrometry.

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  1. stitch stitch Public

    Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

    C# 22 3

  2. annotator annotator Public

    An easy tool empowering everyone to annotate complex spectra

    Rust 5

  3. rustyms rustyms Public

    A rust library for parsing Pro Forma peptides and matching them against MS spectra

    Rust 16 5

  4. align-cli align-cli Public

    A CLI for pairwise alignment of sequences, using both normal and mass based alignment.

    Rust 11

Repositories

Showing 8 of 8 repositories
  • rustyms Public

    A rust library for parsing Pro Forma peptides and matching them against MS spectra

    snijderlab/rustyms’s past year of commit activity
    Rust 16 Apache-2.0 5 9 0 Updated Nov 8, 2024
  • annotator Public

    An easy tool empowering everyone to annotate complex spectra

    snijderlab/annotator’s past year of commit activity
    Rust 5 MIT 0 16 0 Updated Nov 7, 2024
  • align-cli Public

    A CLI for pairwise alignment of sequences, using both normal and mass based alignment.

    snijderlab/align-cli’s past year of commit activity
    Rust 11 Apache-2.0 0 0 0 Updated Nov 6, 2024
  • stitch Public

    Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

    snijderlab/stitch’s past year of commit activity
    C# 22 MIT 3 20 0 Updated Oct 15, 2024
  • stitch-assets Public archive
    snijderlab/stitch-assets’s past year of commit activity
    CSS 0 MIT 0 0 0 Updated Sep 18, 2024
  • snijderlab/stitch-ci-results’s past year of commit activity
    0 0 0 0 Updated Feb 26, 2024
  • .github Public
    snijderlab/.github’s past year of commit activity
    0 0 0 0 Updated Feb 21, 2024
  • rustyms-imgt Public archive

    Has been taken up by rustyms

    snijderlab/rustyms-imgt’s past year of commit activity
    Rust 0 Apache-2.0 0 0 0 Updated Feb 13, 2024

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