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NeuroPoly

neuropoly
Montreal, Canada

NeuroPoly Lab is actively maintaining the following open-source projects:

  • Spinal Cord Toolbox: Comprehensive software package dedicated to the processing and analysis of spinal cord MRI data. Written in Python.
  • AxonDeepSeg: Segmentation of axons and myelin from histology data using deep learning. Written in Python.
  • qMRLab: Software package that encloses a large variety of analysis techniques for quantitative MR image analysis. Written in MATLAB/Octave.
  • ivadomed: Python library of deep learning methods for medical data segmentation, based on Pytorch framework. Collaboration between NeuroPoly Lab and the Mila.
  • shimming-toolbox: Open-source software package enabling a variety of MRI shimming (magnetic field homogenization) techniques such as static and real-time shimming for use with standard manufacturer-supplied gradient/shim coils or with custom "multi-coil" arrays.

Featured work

  1. neuropoly/gmseg

    Spinal cord gray matter segmentation using deep dilated convolutions.

    Jupyter Notebook 45
  2. neuropoly/domainadaptation

    Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

    Python 43
  3. neuropoly/deep-active-learning

    Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

    Jupyter Notebook 38

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