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…y-efficient processing - Updated scale_abundance to use SummarizedExperiment::assayNames for better compatibility. - Introduced scale_abundance_h5 for chunked processing of SummarizedExperiment objects, allowing for parallel execution with BiocParallel. - Added checks for input validity and improved handling of reference samples. - Enhanced documentation to reflect new functionality and usage instructions.
…nk processing - Bumped package version to 2.1.1. - Added chunk_sample_size parameter to scale_abundance for memory-efficient processing of large datasets. - Improved documentation to include new parameter details. - Refactored scaling logic to support chunked processing with BiocParallel for better performance.
…e datasets - Bumped package version to 2.1.1. - Introduced memory-efficient chunked processing in scale_abundance with the new chunk_sample_size parameter. - Enabled parallel computation support via BiocParallel, improving performance for large-scale analyses. - Ensured identical results between chunked and non-chunked processing for reproducibility. - Updated documentation with usage examples and key improvements for better user guidance.
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