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Conda env based build and slurm runscripts for UW Hyak #44

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@mtauraso mtauraso commented Mar 1, 2023

Major focus of this PR is a slurm runscript that currently works on Hyak. In order to make this batteries included, the change also has:

  • Data files needed for the smallest possible run (5 processes) in globalfit/data. There is an included readme, and the CMakeLists.txt installs these alongside globalfit so they are accessible at runtime. These data files originally came from Tyson and were not modified.
  • Slurm scripts for both Hyak and Nasa's environment. The NASA script is a reference implementation that was used to develop the Hyak one. I have only ever run the Hyak config.
  • Conda environment definition and build script which function on Hyak to provide all of global fit and MBH dependencies, except for MPI/UCX which are provided by Hyak's module system (Lmod)

There is an intermittent crash-on-startup that happens sometimes on Hyak. At time of writing it is no longer reproducing; however, it does not appear to be the result of anything global_fit is doing. There is some additional crash-handling in the Hyak slurm script intended to capture core dumps and dmesg output if it ever occurs again on Hyak.

@mtauraso mtauraso marked this pull request as ready for review March 28, 2023 16:39
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