v0.7.0

json2args

The json2args package can be used in docker container following the Tool specification.
Following these specifications, docker-based and reproducible scientifc tools or workflows can be implemented
upon a set of additional files inside the container. Minimal metadata is added via a tool.yml and the
parameterization and data specification is done via a input.json, mounted along with the data files into the container.

This package is a utility for Python based docker tools, that loads, parses and validates the input parameters.
Optionally, you can use the package to pre-load standard input files into the appropriate Python data strurctures.

from json2args import get_parameter, get_data

params = get_parameter()
iris_dataset = get_data('iris')  # optional

# usage
params['foo']   # can be a string 'bar'
iris_dataset    # This is a pandas.Dataframe, loaded from a standard CSV

What's Changed

• add the common logger by @mmaelicke in #17
• Update pypi-publish.yml by @mmaelicke in #20
• Typed by @mmaelicke in #19

Full Changelog: v0.6.2...v0.7.0