Skip to content

remove spaces in fastq headers that can cause issues with STAR mapping followed by UMI duplicate removal

Notifications You must be signed in to change notification settings

ulelab/remove_spaces_in_fastq_headers

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 

Repository files navigation

remove_spaces_in_fastq_headers

remove spaces in fastq headers that can cause issues with STAR mapping followed by UMI duplicate removal

Usage: python remove_spaces.py input.fastq(.gz) [output.fastq.gz] Requirements: pigz installed in your environment

About

remove spaces in fastq headers that can cause issues with STAR mapping followed by UMI duplicate removal

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages