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1. scChIPseq scChIPseq Public

   Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis

   R 20 5

2. ChromSCape ChromSCape Public

   ChromSCape

   R 14 8

3. benchmark_scepigenomics benchmark_scepigenomics Public

   Jupyter Notebook 9

4. ChemoPersistance ChemoPersistance Public

   Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment

   R 7 2

5. scChIPseq_DataEngineering scChIPseq_DataEngineering Public

   This pipeline is dedicated to create single-cell count matrix from paired-end raw fastQ files coming from single-cell ChIP-seq experiments.

   Shell 4 1

6. IDclust IDclust Public

   IDclust is an unsupervised method for clustering single-cell datasets (scRNA, scEpigenome). The cells are iteratively re-processed and re-clustered. Subclusters are created provided they are signif…

   R 4