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Issues list

upgrade libbdsg version from pip installation
#203 opened Aug 26, 2024 by Plogeur
1
Build fails on Ubuntu 24
#197 opened May 29, 2024 by rlorigro
When I use python bdsg to deal with a packedgraph, I found a question.
#194 opened Dec 23, 2023 by pioneer-pi
3
Docs don't seem to properly list C++ methods anymore
#161 opened Aug 22, 2022 by adamnovak
Docs/Python bindings broke because of SnarlDistanceIndex
#160 opened Aug 22, 2022 by adamnovak
@xchang1
1
Overlays don't work well with haplotype paths
#158 opened May 11, 2022 by adamnovak
Overlays don't expose path metadata methods
#157 opened May 11, 2022 by adamnovak
Building a big bdsg::yomo::UniqueMappedPointer<bdsg::MappedIntVector> and *then* saving it causes total chain size reported by get_usage() to increase
#132 opened Nov 15, 2021 by adamnovak
Add low level methods for handle graphs enhancement New feature or request
#129 opened Oct 4, 2021 by rlorigro
2
BUILD_STATIC flag not working
#123 opened Sep 3, 2021 by rlorigro
Graph implementations in libbdsg use copy constructors instead of move during vector reallocations
#118 opened Aug 21, 2021 by jeizenga
How to extract most likely position of series of nodes
#104 opened Mar 25, 2021 by RenzoTale88
5
Deprecate libbdsg odgi
#102 opened Mar 15, 2021 by adamnovak
@adamnovak
Example of using bdsg.bdsg.PositionOverlay
#93 opened Jan 19, 2021 by RenzoTale88
1
We should be able to install via pip without checking the python3 on the PATH
#82 opened Oct 1, 2020 by adamnovak
Needs to be able to read GFA by itself
#79 opened Sep 25, 2020 by adamnovak
1
reinterpret_cast should maybe be static_cast
#76 opened Aug 24, 2020 by adamnovak
1
Too hard to use as an ExternalProject
#73 opened Jul 8, 2020 by adamnovak
1
missing Python.h on system where it is present
#65 opened Apr 26, 2020 by ekg
1
Resizing factor bug in PackedGraph
#46 opened Mar 16, 2020 by jeizenga
Deleting steps while looping through the steps on a node
#35 opened Dec 11, 2019 by adamnovak
Looks for DYNAMIC in the wrong(?) place
#23 opened Sep 12, 2019 by adamnovak
1
Let's get Travis running the unit tests
#21 opened Sep 6, 2019 by glennhickey
The ODGI graph does not pass the handle graph tests ported over from VG
#19 opened Aug 24, 2019 by jeizenga
9
ProTip! Follow long discussions with comments:>50.