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815 Open 1,233 Closed
815 Open 1,233 Closed
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Issues list

Unrecoverable error in GCSA2 indexing
#4406 opened Sep 21, 2024 by ld9866
Read coverage of haplotype sampling
#4405 opened Sep 20, 2024 by SC-Duan
1
Memory limit exceeded during vg autoindex for GCSA/LCP indexing
#4404 opened Sep 20, 2024 by HuangXZhuo
5
Error When Running "vg gbwt --gbz-format -g hprc-v1.0-mc-grch38.gfa.gz -G hprc-v1.0-mc-grch38.gfa"
#4401 opened Sep 18, 2024 by AbdelF6
1
Update vg rna to project reasonably onto haplotypes containing CNVs
#4399 opened Sep 13, 2024 by jeizenga
Hello, I have a question about vg map.
#4398 opened Sep 13, 2024 by pioneer-pi
1
confused about the number of genome and gff files being provided to vg autoindex while mapping RNA data
#4393 opened Sep 10, 2024 by QianghuiZhu
3
Different BAM alignments when using an Ubuntu 20.04 base image versus a 22.04 base image
#4391 opened Sep 6, 2024 by dpuleri
sdsl-lite cmake issue
#4389 opened Sep 4, 2024 by grenaud
3
vg autoindex vg giraffe pggb gfa
#4387 opened Sep 3, 2024 by hgz2021
1
Negative or "*" end-position for named-coordinates gaf with giraffe
#4386 opened Sep 2, 2024 by ASLeonard
vg pack error
#4384 opened Aug 27, 2024 by JONGHOLEE-myrrh
Get input file error
#4382 opened Aug 22, 2024 by OZTaekOppa
5
Throw an error "error: trying to access a snarl tree node of the wrong type" in haplotypes
#4381 opened Aug 21, 2024 by wjwei-handsome
11
Release vg v1.60.0
#4374 opened Aug 12, 2024 by adamnovak
26 tasks
v1.60.0
vg convert failes while converting gbz to xg with signal 6 error
#4372 opened Aug 10, 2024 by leleory
8
Any option like BWA MEM '-C'?
#4370 opened Aug 8, 2024 by alshai
1
Giraffe needs to better deal with systems where multiple processes opening the distance index causes slowdowns
#4369 opened Aug 8, 2024 by adamnovak
2 tasks
Giraffe alignment is very slow and produces warning[vg::Watchdog] messages unless rescue is disabled
#4368 opened Aug 7, 2024 by polchan
13
vg call report missing allele
#4358 opened Jul 28, 2024 by Han-Cao
2
Right method to annotate genes on pangenome graph
#4357 opened Jul 26, 2024 by yeeus
1
About the usage of vg deconstruct
#4356 opened Jul 26, 2024 by Tonitsk8264
5
vg surject and pack fail on GraphAligner produced .gam
#4355 opened Jul 26, 2024 by peterdfields
4
GAF nodes do not correspond to VCF nodes
#4340 opened Jul 10, 2024 by m-bogaerts
3
vg autoindex --workflow mpmap
#4339 opened Jul 10, 2024 by jwli-code
1
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