Develop angel

.Trash-1005/info/01_dataset_artifact-output.ipynb.trashinfo

@@ -0,0 +1,3 @@
+[Trash Info]
+Path=nbs_pipeline/output/01_dataset_artifact-output.ipynb
+DeletionDate=2024-07-23T13:32:34

.Trash-1005/info/02b_encoder_MVP-output.ipynb.trashinfo

@@ -0,0 +1,3 @@
+[Trash Info]
+Path=nbs_pipeline/output/02b_encoder_MVP-output.ipynb
+DeletionDate=2024-07-23T13:32:34

.Trash-1005/info/02c_encoder_MVP-sliding_window_view-output.ipynb.trashinfo

@@ -0,0 +1,3 @@
+[Trash Info]
+Path=nbs_pipeline/output/02c_encoder_MVP-sliding_window_view-output.ipynb
+DeletionDate=2024-07-23T13:32:34

.gitignore

@@ -166,3 +166,5 @@ checklink/cookies.txt
 /docker_test/
 /docker/tmp_configComits.sh
 .Trash-1004
+.installing
+quarto-linux-amd64.deb

docker/DESCRIPTION

@@ -1,3 +1,7 @@
+Package: vdvats
+Version: 0.1.0
+Title: DeepVATS
+Description: Deep Learning Visual Analytics Tools
 Depends:
     R (>= 3.6.0),
     shiny,
@@ -13,7 +17,11 @@ Depends:
     zoo,
     reticulate,
     xts,
+    plotly,
+    shinyFiles,
+    yaml,
+    xts,
     semantic.dashboard
 Remotes: 
     r-lib/later,
-    apache/arrow/r
+    apache/arrow/r

docker/Dockerfile.rstudio

@@ -12,6 +12,10 @@
 FROM misantamaria/dvats-rstudio:rocker-ml4.2
 SHELL [ "/bin/bash", "--login", "-c" ]
 
+
+
+COPY ./docker/DESCRIPTION /tmp/
+
 ## Add Rstudio Server user
 ARG USER=user
 ARG UID=1000
@@ -41,6 +45,10 @@ RUN chmod u+x /usr/local/bin/entrypoint-rstudio.sh
 
 WORKDIR $HOME
 
+RUN R -e "devtools::install_deps('/tmp', dependencies = TRUE)"
+
 # Initialize R-Stusio Server
 ENTRYPOINT [ "/usr/local/bin/entrypoint-rstudio.sh" ]
 
+
+

docker/docker-compose.yml

@@ -68,9 +68,10 @@ services:
           # TODO (28/03/2023): I don't know why it is not working without this
           - ENV_VARS=WANDB_ENTITY,WANDB_API_KEY,WANDB_PROJECT,USER,USERID,GROUPID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES
       volumes:
-         - ../r_shiny_app:/home/${USER_NAME}/app 
+         - ../r_shiny_app:/home/${USER_NAME}/work/app 
          - ${LOCAL_DATA_PATH}:/home/${USER_NAME}/data/ 
          - ../dvats:/home/${USER_NAME}/dvats
+         - ../nbs_pipeline:/home/${USER_NAME}/work/nbs_pipeline
          - conda-env:/usr/local/share/miniconda3/envs/env
          - miniconda:/home/user/local/share/miniconda3 
       deploy:
@@ -86,4 +87,4 @@ services:
 volumes:
   conda-env:
   miniconda:
-  lib:
+  lib:

docker/entrypoint.sh

@@ -57,10 +57,6 @@ fi
 [ -d "/home/$USER/data/wandb_artifacts" ] || mkdir -p "/home/$USER/data/wandb_artifacts"
 
 
-if ! grep -Fxq "./path/to/check_yml_changes.sh" $HOME/work/.git/hooks/pre-commit; then \
-        sed -i '$i./path/to/check_yml_changes.sh' $HOME/work/.git/hooks/pre-commit; \
-    fi
-
 exec "$@"
 
 

dvats/config.py

@@ -69,7 +69,7 @@ def replace_includes_with_content(
     """
     if (print_flag):
         print("... About to replace includes with content")
-    with open(path+filename, 'r') as f:
+    with open(path+filename, 'r', encoding = 'utf-8') as f:
         content = f.read()
 
         # Mientras exista una directiva !include en el contenido, sigue reemplazándola
@@ -84,7 +84,7 @@ def replace_includes_with_content(
             include_filename = content[start_quote_idx:end_quote_idx]
 
             # Lee el archivo incluido
-            with open(path+include_filename, 'r') as include_file:
+            with open(path+include_filename, 'r',  encoding = 'utf-8') as include_file:
                 included_content = include_file.read()
 
             # Reemplaza la directiva por el contenido del archivo incluido

nbs/config.ipynb

@@ -197,7 +197,7 @@
     "    \"\"\"\n",
     "    if (print_flag):\n",
     "        print(\"... About to replace includes with content\")\n",
-    "    with open(path+filename, 'r') as f:\n",
+    "    with open(path+filename, 'r', encoding = 'utf-8') as f:\n",
     "        content = f.read()\n",
     "        \n",
     "        # Mientras exista una directiva !include en el contenido, sigue reemplazándola\n",
@@ -212,7 +212,7 @@
     "            include_filename = content[start_quote_idx:end_quote_idx]\n",
     "            \n",
     "            # Lee el archivo incluido\n",
-    "            with open(path+include_filename, 'r') as include_file:\n",
+    "            with open(path+include_filename, 'r',  encoding = 'utf-8') as include_file:\n",
     "                included_content = include_file.read()\n",
     "            \n",
     "            # Reemplaza la directiva por el contenido del archivo incluido\n",
@@ -2831,6 +2831,18 @@
    "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.13"
   }
  },
  "nbformat": 4,