Name	Name	Last commit message	Last commit date
Latest commit History 523 Commits
ANNOVAR-2-REDCap	ANNOVAR-2-REDCap
Benchmarking	Benchmarking
ChIPseeker_profile_plots	ChIPseeker_profile_plots
DiffBind	DiffBind
DiffBind_scripts_reports	DiffBind_scripts_reports
HITS-CLIP_pipeline	HITS-CLIP_pipeline
HOMER_mergePeaks_pipeline	HOMER_mergePeaks_pipeline
HOMER_motif_analysis	HOMER_motif_analysis
HiC-Bench-utils	HiC-Bench-utils
IGV-snapshot-wrapper	IGV-snapshot-wrapper
MACS2-params-testing	MACS2-params-testing
MuTect2-filter-testing	MuTect2-filter-testing
MuTect2-variant-aggregation	MuTect2-variant-aggregation
NYGC_download	NYGC_download
Oncomine	Oncomine
Oncomine_NGS50_overlap	Oncomine_NGS50_overlap
PAR-CLIP_pipeline	PAR-CLIP_pipeline
Python_scripts	Python_scripts
QualityControl	QualityControl
SeraCare_variant_analysis	SeraCare_variant_analysis
SuperEnhancer_calling	SuperEnhancer_calling
UCSC_custom_tracks	UCSC_custom_tracks
anaconda	anaconda
annotate_peaks_ChIPpeakAnno	annotate_peaks_ChIPpeakAnno
bedtools_coverage_chrY	bedtools_coverage_chrY
benchmarking_GetBaseCountsMultiSample	benchmarking_GetBaseCountsMultiSample
bowtie2_alignment_indexing	bowtie2_alignment_indexing
clustering_heatmaps	clustering_heatmaps
code	code
data	data
fastq_filter_by_region	fastq_filter_by_region
fusions-Delly2	fusions-Delly2
gene_plots	gene_plots
genomic_signatures	genomic_signatures
get_TSS_regions_Gencode_Ensembl	get_TSS_regions_Gencode_Ensembl
iGenomes	iGenomes
misc_workflow	misc_workflow
mutational_signatures-deconstructSigs	mutational_signatures-deconstructSigs
peak_overlap_multi_report	peak_overlap_multi_report
peaks-per-sample_HiCBench-MACS2_report	peaks-per-sample_HiCBench-MACS2_report
peaks_annotation_summaries_ChIPSeeker	peaks_annotation_summaries_ChIPSeeker
peaks_vs_alignments_per_sample_plots	peaks_vs_alignments_per_sample_plots
pipeline-peaks-report	pipeline-peaks-report
python_read_heredoc	python_read_heredoc
reverse_compliment-shiny	reverse_compliment-shiny
sample-data	sample-data
scripts	scripts
signatures_aggregate	signatures_aggregate
survival	survival
tcga-tmb-analysis	tcga-tmb-analysis
.gitignore	.gitignore
MACS1_BigWig_workflow.sh	MACS1_BigWig_workflow.sh
README.md	README.md
bed_chrom_split.py	bed_chrom_split.py
bed_dir_barplot.R	bed_dir_barplot.R
bowtie2_MACS1_bedGraph_workflow2.sh	bowtie2_MACS1_bedGraph_workflow2.sh
clusterProfiler_DiffBind_GO_pipeline.R	clusterProfiler_DiffBind_GO_pipeline.R
enable_sns_setx.sh	enable_sns_setx.sh
find_missing_file.py	find_missing_file.py
find_missing_files.py	find_missing_files.py
find_missing_samples.py	find_missing_samples.py
phoenix_cluster_HOMER_example.md	phoenix_cluster_HOMER_example.md
references.bib	references.bib
run_MuTect2_split.sh	run_MuTect2_split.sh
run_gtools_make_matrices.py	run_gtools_make_matrices.py
sort-bed.sh	sort-bed.sh
toolbox.py	toolbox.py
transfer_BaseSpace_to_NGS_sequencer_dir.sh	transfer_BaseSpace_to_NGS_sequencer_dir.sh

Name

Last commit message

Last commit date

523 Commits

ANNOVAR-2-REDCap

Benchmarking

ChIPseeker_profile_plots

DiffBind

DiffBind_scripts_reports

HITS-CLIP_pipeline

HOMER_mergePeaks_pipeline

HOMER_motif_analysis