Version 1.0.

zy-optimistic · Jun 30, 2022 · 3eb1ed1 · 3eb1ed1
1 parent bea44a3
commit 3eb1ed1
Show file tree

Hide file tree

Showing 2 changed files with 13 additions and 1 deletion.
diff --git a/scripts/pipeline.pl b/scripts/pipeline.pl
@@ -57,7 +57,7 @@ =head1 Note:
 #use Data::Dumper;
 
 my $task = 'gaap pipe';
-my $mode = 0;
+my $mode = 1;
 
 my %data = (
 	assembly   => '',
@@ -98,8 +98,15 @@ =head1 Note:
 	if (system "mkdir -p $dir"){
 		die "[$task] Error! Can't make directory:\"$dir\"\n";
 	}
+}else {
+	my @f = <"$dir/mapping">;
+	if (@f) {
+			die "[$task] Directory $dir/mapping is not empty. Please specify another directory or a empty directory.\n";
+	}
 }
 
+
+
 $prefix = "gaap_output" unless $prefix;
 my $prefix_out = "$dir/$prefix" if $dir;
 

diff --git a/scripts/run_merqury.pl b/scripts/run_merqury.pl
@@ -48,6 +48,11 @@
     if (system "mkdir -p $dir"){
         die "[$task] Error! Can't make directory:\"$dir\"\n";
     }
+}else {
+	my @f = <$dir>;
+	if (@f) {
+			die "[$task] Directory $dir is not empty. Please specify another directory or a empty directory.\n";
+	}
 }
 if (! -e "$dir/meryl"){
     if (system "mkdir -p $dir/meryl"){