Correct build in travis. Change vdjdb shell script

antigenomics · Jul 10, 2016 · a3db1b4 · a3db1b4
1 parent a3dee30
commit a3db1b4
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -10,7 +10,7 @@ install:
   - cd ..
 
 script:
-  - gradle clean install
+  - gradle clean build
   - java -Xmx4G -jar `ls build/libs/vdjdb-*.jar` -v -j -S human -R TRB --search-scope 3,1,1,3 --search-preset high-precision src/test/resources/sergey_anatolyevich.gz test
   - if [[ ! -s test.sergey_anatolyevich.annot.txt ]]; then exit 1; fi; rm test.sergey_anatolyevich.annot.txt
   - if [[ ! -s test.annot.summary.txt ]]; then exit 1; fi; rm test.annot.summary.txt

diff --git a/vdjdb b/vdjdb
@@ -86,7 +86,7 @@ do
             shift
             ;;
         *)
-            vdjdbArgs+=(${key})
+            vdjdbArgs+=("${key}")
             ;;
     esac
 done
@@ -141,4 +141,4 @@ then
     exit 1
 fi
 
-$java -XX:+AggressiveOpts "${javaArgs[@]}" -jar $jar "${vdjdbArgs[@]}"
+$java -XX:+AggressiveOpts "${javaArgs[@]}" -jar $jar "${vdjdbArgs[@]}"