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23 Open 33 Closed
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Issues list

Refactor into a proper Spark extension
#181 opened Nov 10, 2024 by mwiewior
Run benchmarks
#138 opened Nov 25, 2021 by mwiewior Grand finale
@mwiewior
Update Readme.md documentation Improvements or additions to documentation enhancement New feature or request
#137 opened Nov 25, 2021 by mwiewior Grand finale
Different phred encoding enhancement New feature or request
#133 opened Nov 23, 2021 by mwiewior
Migrate CI/CD to github actions enhancement New feature or request
#128 opened Nov 21, 2021 by mwiewior
Coverage performance tuning enhancement New feature or request performance
#117 opened Nov 16, 2021 by mwiewior
Investiate how to optimize CRAM index access without using reference if only contig and positions needed enhancement New feature or request performance question Further information is requested
#114 opened Nov 15, 2021 by mwiewior
unify config passing (field in contig agg?)
#84 opened Oct 15, 2021 by agaszmurlo
Add error handling for missing path for readBam
#73 opened May 7, 2021 by mwiewior
@mwiewior
Add support for oap enhancement New feature or request
#68 opened Apr 6, 2021 by mwiewior
Interval joins not working with partitioned tables
#63 opened Mar 15, 2021 by mwiewior
Issue with sequila running in JL lab env bug Something isn't working
#55 opened Jan 31, 2021 by mwiewior
SequilaSession and SequilaAnalyzer refactor to use sparkextensions
#52 opened Jan 30, 2021 by mwiewior
FASTQ datasource
#49 opened Jan 14, 2021 by agaszmurlo
new quals should take pileup conf into account. enhancement New feature or request
#44 opened Nov 12, 2020 by mwiewior
Investigate if it's possible not to se broadcast in local mode enhancement New feature or request performance
#39 opened Nov 11, 2020 by mwiewior
Investigate very large caches for long reads for some partitions bug Something isn't working long reads performance
#38 opened Nov 10, 2020 by mwiewior 0.5.18
Performance improvements for long reads enhancement New feature or request long reads performance
#35 opened Nov 9, 2020 by mwiewior 0.5.18
1
@mwiewior
2
Issues with gatk-test-data bug Something isn't working wgs
#29 opened Nov 7, 2020 by mwiewior 0.5.18
Problem with running CRAM - perhaps some doc on how to create supported CRAM documentation Improvements or additions to documentation
#26 opened Nov 3, 2020 by mwiewior Grand finale
1
Fix documentation documentation Improvements or additions to documentation
#17 opened Sep 29, 2020 by mwiewior
gatk converter enhancement New feature or request
#14 opened Sep 28, 2020 by agaszmurlo 0.5.18
@agaszmurlo
samtools converter enhancement New feature or request
#13 opened Sep 28, 2020 by agaszmurlo 0.5.18
@agaszmurlo
ProTip! Follow long discussions with comments:>50.