fade
will now inspect all mapped reads instead of just primary reads when running fade annotate
. This will mean fade is better at ejecting or trimming supplementary or secondary reads that contain artifacts. Via internal testing I found that this should not effect INDEL variant calling.
In addition, I have reworked fade out
's -c
flag since there were bugs in the previous code.
The macOS (darwin) binary is a dynamically linked binary so the htslib (>= 1.13) and parasail shared libraries must be installed to use it (unlike the linux binary).
Full Changelog: v0.5.7...v0.6.0