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fix: dedup veupath gtf and improve display name #1056

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Merged
NoopDog merged 2 commits into from
Jan 8, 2026
Merged

fix: dedup veupath gtf and improve display name #1056

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fa81083
fix: dedup veupath gtf and improve display name
d-callan Jan 7, 2026
bc80149
fix: update filterGTFFile jsdoc
d-callan Jan 7, 2026
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4 changes: 2 additions & 2 deletions ...ts/components/Main/components/Stepper/components/Step/GTFStep/hooks/UseUCSCFiles/utils.ts
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Expand Up @@ -17,8 +17,8 @@ export function parseUCSCFilesResult(response: Result): string[] {
/**
* Filters the GTF file URLs from the UCSC files API response.
* @param url - URL.
* @returns True if the URL ends with ".gtf.gz".
* @returns True if the URL lives under the UCSC genes directory and ends with ".gtf.gz".
*/
function filterGFTFile(url: string): boolean {
return url.endsWith(".gtf.gz");
return url.includes("/genes/") && url.endsWith(".gtf.gz");
}
1 change: 1 addition & 0 deletions ...nfigureWorkflowInputs/components/Main/components/Stepper/components/Step/GTFStep/utils.ts
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Expand Up @@ -48,6 +48,7 @@ export const getGeneModelLabel = (url: string): string => {
[/\.ncbiRefSeq\./, "NCBI RefSeq"],
[/\.ncbiGene\./, "NCBI Gene"],
[/\.xenoRefGene\./, "UCSC Xeno RefGene"],
[/veupathGenes\./i, "VEuPathDB"],
];

for (const [pattern, label] of labelPatterns) {
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