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21 Open 123 Closed
21 Open 123 Closed
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Issues list

ValueError: SAM/BAM file 'sam_file' does not exist!
#156 opened Nov 4, 2024 by handesome
2
ERROR in batch_add_transcripts (UNIQUE constraint failed)
#155 opened Sep 22, 2024 by sbresnahan
Problem installing Conda version
#154 opened Sep 17, 2024 by emsisson
Error with samtools index during TALON run
#153 opened Aug 28, 2024 by jadedavis5
ERROR : [process_sams.py:108:preprocess_sam] when running talon
#152 opened Jun 7, 2024 by Dongxu-Zheng
7
The transcript numbers don't match between example_raw_talon.gtf and example_talon_abundance.tsv
#151 opened Jun 3, 2024 by dudududu12138
Multithreading is not working
#150 opened Apr 23, 2024 by lscdanson
What is the meaning of ISM None
#148 opened Feb 16, 2024 by kathryncrouch
2
Issue with talon filter
#142 opened Oct 27, 2023 by rugilemat
4
Problem with talon_initialize_database
#140 opened Oct 19, 2023 by Kiliankleemann
13
TALON support for CIGAR strings found in pbmm2 sam files
#132 opened Jul 13, 2023 by ddpinto
Rules for considering splicing variants as identical in TALON
#126 opened Feb 15, 2023 by mihshimada
2
Error: value too large to convert to int16_t
#120 opened Jan 7, 2023 by catsargent
1
numpy<1.24.0 should be added as a requirement
#119 opened Jan 7, 2023 by catsargent
I get 'Annotation name 'ADV5_annot' not found in this database' in step talon_abundance
#118 opened Jan 2, 2023 by thadasps
1
Error when using non-human GTF
#113 opened Nov 8, 2022 by ConnorBarnhill
2
Annotation name not found
#112 opened Nov 8, 2022 by rkyger-git
11
removing sample(s) from the talon database
#104 opened May 4, 2022 by ew367
8
Many reads fail QC during TALON run but meet primary, coverage, and identity filters
#98 opened Apr 15, 2022 by callumparr
5
Roll config file into command line parameters? enhancement New feature or request
#77 opened May 8, 2021 by oneillkza
1
Multiprocessing sometimes fails in talon_label_reads bug Something isn't working
#66 opened Jul 9, 2020 by fairliereese
@fairliereese
ProTip! Exclude everything labeled bug with -label:bug.