Added custom/shortenfastaids

[GallVp]

PR checklist

Closes #XXX

• Added custom/shortenfastaids for Added a draft for fasta_ltrretriever_lai #4984
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Emit the versions.yml file.
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda

[mahesh-panchal]

Have you checked there are no other modules in nf-core modules that can provide this functionality?

[maxulysse]

Can we get some LICENSE and authoring info on this script?

[GallVp]

Thank you @maxulysse

I have added the authoring and LICENSE info.

[GallVp]

Google searches are leading me to custom scripts.

[mahesh-panchal]

What about https://www.nextflow.io/docs/latest/operator.html#splitfasta. Can this operator replace this module in the subworkflow? For example, specifically using the record: [ id: true] or perhaps text or desc are relevant. Also this can work on files too using the map operator.

[GallVp]

Replaced with Groovy code, see #4984