Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bump version to WIPERTOOLS 1.1.5 #7411

Merged
merged 9 commits into from
Feb 2, 2025
Merged

bump version to WIPERTOOLS 1.1.5 #7411

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
385133b
Refactor fastq and report variable names for consistency across wiper…
mazzalab Jan 13, 2025
cd99ed9
Refactor variable names for consistency in fastq and report processin…
mazzalab Jan 13, 2025
6fc9b5e
Added nftests to gseagsea (#7266)
nschcolnicov Jan 13, 2025
3c21666
Remove obsolete test cases from fastqscatter and clean up pytest modu…
mazzalab Jan 18, 2025
056f903
Update timestamps in fastqscatter test snapshots for consistency
mazzalab Jan 18, 2025
e1418f0
Bump wipertools version to 1.1.5 and update related test snapshots
mazzalab Jan 31, 2025
2cb71ac
Reverted content of tag gsea/gsea
mazzalab Jan 31, 2025
2b8ad23
Merge branch 'master' into master
mazzalab Jan 31, 2025
779b84f
Merge branch 'master' into master
mazzalab Feb 1, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/fastqgather/environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- "bioconda::wipertools=1.1.4"
- "bioconda::wipertools=1.1.5"
4 changes: 2 additions & 2 deletions modules/nf-core/wipertools/fastqgather/main.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process WIPERTOOLS_FASTQGATHER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/wipertools:1.1.4--pyhdfd78af_0':
'biocontainers/wipertools:1.1.4--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/wipertools:1.1.5--pyhdfd78af_0':
'biocontainers/wipertools:1.1.5--pyhdfd78af_0' }"

input:
tuple val(meta), path(fastq)
Expand Down
10 changes: 5 additions & 5 deletions modules/nf-core/wipertools/fastqgather/tests/main.nf.test.snap
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28,9 +28,9 @@
],
"meta": {
"nf-test": "0.9.2",
"nextflow": "24.10.3"
"nextflow": "24.10.2"
},
"timestamp": "2025-01-18T07:48:36.495342"
"timestamp": "2025-01-31T10:49:02.021919993"
},
"merge two gzipped fastq - fastq.gz": {
"content": [
Expand Down Expand Up @@ -61,8 +61,8 @@
],
"meta": {
"nf-test": "0.9.2",
"nextflow": "24.10.3"
"nextflow": "24.10.2"
},
"timestamp": "2025-01-18T07:48:25.182554"
"timestamp": "2025-01-31T10:48:43.687455488"
}
}
}
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/fastqscatter/environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- "bioconda::wipertools=1.1.4"
- "bioconda::wipertools=1.1.5"
4 changes: 2 additions & 2 deletions modules/nf-core/wipertools/fastqscatter/main.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process WIPERTOOLS_FASTQSCATTER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/wipertools:1.1.4--pyhdfd78af_0':
'biocontainers/wipertools:1.1.4--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/wipertools:1.1.5--pyhdfd78af_0':
'biocontainers/wipertools:1.1.5--pyhdfd78af_0' }"

input:
tuple val(meta), path(fastq)
Expand Down
8 changes: 4 additions & 4 deletions modules/nf-core/wipertools/fastqscatter/tests/main.nf.test.snap
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -34,9 +34,9 @@
],
"meta": {
"nf-test": "0.9.2",
"nextflow": "24.10.3"
"nextflow": "24.10.2"
},
"timestamp": "2025-01-18T17:33:01.715401"
"timestamp": "2025-01-31T10:49:30.871539752"
},
"test1 - fastq": {
"content": [
Expand Down Expand Up @@ -73,8 +73,8 @@
],
"meta": {
"nf-test": "0.9.2",
"nextflow": "24.10.3"
"nextflow": "24.10.2"
},
"timestamp": "2025-01-18T17:32:49.482796"
"timestamp": "2025-01-31T10:49:16.633370109"
}
}
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/fastqwiper/environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- "bioconda::wipertools=1.1.4"
- "bioconda::wipertools=1.1.5"
4 changes: 2 additions & 2 deletions modules/nf-core/wipertools/fastqwiper/main.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process WIPERTOOLS_FASTQWIPER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/wipertools:1.1.4--pyhdfd78af_0':
'biocontainers/wipertools:1.1.4--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/wipertools:1.1.5--pyhdfd78af_0':
'biocontainers/wipertools:1.1.5--pyhdfd78af_0' }"

input:
tuple val(meta), path(fastq)
Expand Down
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/fastqwiper/tests/main.nf.test.snap
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -97,4 +97,4 @@
},
"timestamp": "2025-01-18T07:49:09.920936"
}
}
}
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/reportgather/environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- "bioconda::wipertools=1.1.4"
- "bioconda::wipertools=1.1.5"
4 changes: 2 additions & 2 deletions modules/nf-core/wipertools/reportgather/main.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process WIPERTOOLS_REPORTGATHER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/wipertools:1.1.4--pyhdfd78af_0':
'biocontainers/wipertools:1.1.4--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/wipertools:1.1.5--pyhdfd78af_0':
'biocontainers/wipertools:1.1.5--pyhdfd78af_0' }"

input:
tuple val(meta), path(report)
Expand Down
2 changes: 1 addition & 1 deletion modules/nf-core/wipertools/reportgather/tests/main.nf.test.snap
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -93,4 +93,4 @@
},
"timestamp": "2025-01-18T07:49:32.055316"
}
}
}
Loading