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Add extra input channel to KRAKEN2/ADD #7721

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@jfy133 jfy133 commented Feb 28, 2025

If you provide a pre-made seqid2taxid.map Kraken2 will skip it's own generation of that file.

This adds support for this as requested by @davve2 for createtaxdb.

Requires: nf-core/test-datasets#1511 first

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
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  • Emit the versions.yml file.
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  • Use BioConda and BioContainers if possible to fulfil software requirements.
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@jfy133 jfy133 marked this pull request as ready for review February 28, 2025 21:25
@jfy133 jfy133 marked this pull request as draft February 28, 2025 21:25
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