BigBio Stack
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60 repositories
hvantk
Public- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
sdrf-pipelines
PublicSDRF official validator and converts SDRF to pipeline configuration filesquantms-rescoring
Publicpyspectrafuse
Publicquantms-utils
PublicA python library with scripts and helpers classes for quantms workflowrawQC
Publicpgatk
PublicPython tools for proteogenomics analysis toolkitspectrafuse
Publicquantms-test-datasets
Publicrelink
Publicquantms-containers
Publicsdrf-templates
Publicquantmsdiann
Publicpmultiqc
PublicA library for QC report based on MultiQC frameworknf-modules
Publicqpx
Publicsdrf-annotated-datasets
Publicsdrf-skills
PublicAgentic plugins to annotate SDRF using Claude; Codex; Cursor; Geminimsgfplus
PublicMS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.sdrfedit
Publicquantms
PublicQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quant…mokume
PublicpIR
PublicEstimation of isoelectric point of peptides and proteins using support vector machines (SVM).quantms-portal
Publicquantms.org
Publicfslite
PublicLightweight Feature selection Python librarycrosslinking-datasets
Publictechsdrf
Publicquantms-readthedocs
Public
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