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update gfaffix and vg
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AndreaGuarracino committed Jan 5, 2025
1 parent cc33252 commit c5a0992
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -96,13 +96,13 @@ RUN cargo --help
RUN git clone https://github.com/marschall-lab/GFAffix.git \
&& cd GFAffix \
&& git pull \
&& git checkout a366a94a8d7a2ffbba8978cdbcd071a9b8a03bec \
&& git checkout 7d5fe205a9c46fc4f916174cf8b1ee179e8cdb1f \
&& cargo install --force --path . \
&& mv /root/.cargo/bin/gfaffix /usr/local/bin/gfaffix \
&& cd ../ \
&& rm -rf GFAffix

RUN wget https://github.com/vgteam/vg/releases/download/v1.59.0/vg && chmod +x vg && mv vg /usr/local/bin/vg
RUN wget https://github.com/vgteam/vg/releases/download/v1.62.0/vg && chmod +x vg && mv vg /usr/local/bin/vg

RUN git clone https://github.com/pangenome/vcfbub \
&& cd vcfbub \
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