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update smoothxg #428

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merged 1 commit into from
Nov 16, 2024
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update smoothxg #428

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2 changes: 1 addition & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \
RUN git clone --recursive https://github.com/pangenome/smoothxg \
&& cd smoothxg \
&& git pull \
&& git checkout 66b17aeead7980f517fed8cc9002bdb2e86a0572 \
&& git checkout e93c62356b33c2f6db727452328e09a33bfc82c6 \
&& git submodule update --init --recursive \
&& sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
&& sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
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