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Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#1112 In scverse/squidpy;

· scverse-bot opened on Feb 3, 2026

<code>test_parallelize</code> fails on local tests and is flaky

Status: Open.

#1111 In scverse/squidpy;

· selmanozleyen opened on Feb 2, 2026

Unused parallelization parameters in <code>co_occurrence</code>

Status: Open.

#1110 In scverse/squidpy;

· selmanozleyen opened on Feb 2, 2026

Documentation for <code>sq.gr.spatial_neighbors()</code> likely needs more clarification about the interplay of arguments

Status: Open.

#1102 In scverse/squidpy;

· shashkat opened on Jan 25, 2026

Investigate why docutils&lt;0.22 is needed.

Status: Open.

#1098 In scverse/squidpy;

· selmanozleyen opened on Jan 21, 2026

Handle cases explicitly for <code>KeyError</code> or <code>ValueError</code> in <code>_make_tiles</code>

Status: Open.

#1086 In scverse/squidpy;

· selmanozleyen opened on Dec 17, 2025

Consider having a <code>_typing.py</code> or a way to restructure common type aliases

Status: Open.

#1085 In scverse/squidpy;

· selmanozleyen opened on Dec 16, 2025

We should stop using non-public <code>scanpy.logging.info</code>

Status: Open.

#1081 In scverse/squidpy;

· selmanozleyen opened on Dec 14, 2025

<code>make_tiles</code> doesn't copy transformations from the image it took as input

Status: Open.

#1079 In scverse/squidpy;

· timtreis opened on Dec 8, 2025

<code>make_tiles</code> function always places the tiles in the <code>global</code> coordinate system

Status: Open.

#1078 In scverse/squidpy;

· timtreis opened on Dec 6, 2025

how to highlight specific cluster in spatial_scatter function

Status: Open.

#1060 In scverse/squidpy;

· perl-xxp opened on Nov 12, 2025

Adding more tests for usage of given keys

Status: Open.

#1055 In scverse/squidpy;

· selmanozleyen opened on Nov 7, 2025