0.8.0-dev1

What's Changed

• fix: hgvs/free text dup/del end positions for definite ranges by @korikuzma in #525
• build!: update cool-seq-tool + ga4gh.vrs versions by @korikuzma in #528
  • Temporarily removes gnomad_vcf_to_protein

Full Changelog: 0.8.0-dev0...0.8.0-dev1

0.6.0-dev1

What's Changed

• cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #513
• fix: pin versions + fix /translate_identifier by @korikuzma in #516
• feat: expose cool-seq-tool feature overlap endpoint by @korikuzma in #523

Full Changelog: 0.6.0-dev0...0.6.0-dev1

0.8.0-dev0

What's Changed

• fix: catch errors for (#_#)_#dup and #_(#_#)dup HGVS exprs by @korikuzma in #419
• docs: document branch / version tracking by @korikuzma in #403
• ci: add GH action for installing deps + remove requirements (metaschema) by @korikuzma in #452
• chore: update elastic beanstalk commands by @korikuzma in #456
• feat: add parsed to copy number change endpoint (metaschema) by @korikuzma in #453
• fix!: /parsed_to_cn_var should accept number, definite range, and indefinite range by @korikuzma in #455
• feat: add do_liftover param in parsed to copy number endpoints (metaschema) by @korikuzma in #459
• refactor!: parsed to copy number should accept request body (metaschema) by @korikuzma in #460
• build: update ga4gh.vrsatile.pydantic version by @korikuzma in #461
• fix: Copy Number Count copies should be Number or Indef/Def Range by @korikuzma in #468
• fix: allow comparator to be set in start/end values by @korikuzma in #469
• refactor!: clean up app (metaschema) by @korikuzma in #494
• feat!: update to vrs 2.0-alpha by @korikuzma in #512
• cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #514
• build!: update depdency versions by @korikuzma in #517
• fix: vrs-python translator import statement by @korikuzma in #520

Full Changelog: 0.7.0-dev7...0.8.0-dev0

0.6.0-dev0

What's Changed

• analysis: civic + moa variant analysis by @korikuzma in #439
• ci: add GH action for installing deps + remove requirements by @korikuzma in #442
• revert: analysis: civic + moa variant analysis (#439) by @korikuzma in #446
• build: update ga4gh.vrsatile.pydantic version by @korikuzma in #462
• cicd: update sc_product_id by @korikuzma in #472
• refactor! by @korikuzma in #503

Full Changelog: 0.5.5...0.6.0-dev0

0.5.5

What's Changed

• build: bump gene-normalizer version to 0.1.36 by @korikuzma in #421
• fix: catch errors for (##)#dup and #(##)dup HGVS exprs (#419) by @korikuzma in #422
• docs: update query descriptions for /to_vrs and /normalize by @korikuzma in #423
• docs: document branch / version tracking (#403) by @korikuzma in #424

Full Changelog: 0.5.4...0.5.5

0.5.4

What's Changed

• refactor: Allow option to use existing gene-normalizer instance by @korikuzma in #396
• refactor!: initial cleanup of tokenizers by @korikuzma in #395
• feat!: Apply VRS 1.3 Changes by @korikuzma in #409

Full Changelog: 0.5.3...0.5.4

0.7.0-dev7

What's Changed

• fix: update cool-seq-tool to 0.1.13 by @korikuzma in #410

Full Changelog: 0.7.0-dev6...0.7.0-dev7

0.7.0-dev6

What's Changed

• Issue 394 metaschema by @korikuzma in #402

Full Changelog: 0.7.0-dev5...0.7.0-dev6

0.7.0-dev5

What's Changed

• refactor: Allow option to use existing gene-normalizer instance (staging) by @korikuzma in #397
• refactor!: initial cleanup of tokenizers (metaschema-update) by @korikuzma in #399

Full Changelog: 0.7.0-dev4...0.7.0-dev5

0.7.0-dev4

What's Changed

• ci: resolve actions version warnings by @jsstevenson in #335
• build: update gene-normalizer version to v0.2.6 (staging) by @korikuzma in #337
• build!: replace uta tools with cool seq tool (dev) by @korikuzma in #341
• change: relative_copy_class uses EFO IDs by @korikuzma in #346
• build: update dependency versions by @korikuzma in #352
• perf: gnomad_vcf_to_protein replace call to uta db with df lookup (staging) by @korikuzma in #353
• build: update dependencies (staging) by @korikuzma in #376
• fix: TypeError in _is_grch38_assembly (stgaging) by @korikuzma in #375
• cicd: revert dev termination time back to 12 hours by @korikuzma in #377
• fix: remove duplicate warnings in gnomad_vcf_to_protein (staging) by @korikuzma in #382
• refactor: replace AminoAcidCache with bioutils (staging) by @korikuzma in #381
• fix: add support for ambiguous N IUPAC code for cDNA + genomic (staging) by @korikuzma in #384
• refactor!: update cool-seq-tool (staging) by @korikuzma in #392
• feat: add support for amino acids after del (staging) by @korikuzma in #393

Full Changelog: v0.7.dev0...0.7.0-dev4