v0.2.14: Merge pull request #206 from cancervariants/staging

• Add translate_identifier endpoint
• Fix bug in UTA for ordering alt_ac by desc
• Add support for basic gnomad VCF substitution, insertion, and deletion
• Add support for gnomad VCF -> MANE p

v0.2.13: Merge pull request #194 from cancervariants/staging

• Add HGVS Del Dup Mode in normalize endpoint
  • Currently only supports genomic deletions and duplications
• Update to VRS 1.2.0 models
• Add _id in all VRS models
• Fix position bug in MANE transcript

v0.2.12: Merge pull request #181 from cancervariants/staging

• Only get MANE Transcript if gene is provided in genomic queries
• SEQREPO_DATA_PATH uses /usr/local/share/seqrepo/latest path
• Use latest gene-normalizer

v0.2.11: Merge pull request #148 from cancervariants/issue-140

• Add support for representing HGVS genomic uncertain deletions as VRS Copy Number variation

v0.2.10

• Fix download for refseq_gene_symbols.txt

v0.2.9: Merge pull request #138 from cancervariants/issue-114

• Query seqrepo the efficient way rather than getting entire sequence and then indexing
• Commented out tokenizers that we are not currently using
• Use gene-normalizer to get GeneSymbolTokens
  • Caching this data in both tokenizer and normalize
• Created a table in UTA called genomic to contain genomic accession data (accession, start/end pos, gene). I created a table since we are unable to index views.

v0.2.8

• Update to latest version of VRSATILE
  • ref_allele_seq --> vrs_ref_allele_seq
• Use classes from gene-normalizer rather than implementing again
• Adding validators to pydantic classes

v0.2.6: Merge pull request #134 from cancervariants/issue-132

• normalize return variation descriptor with text object if query can't be normalized
• toVRS returns a list of variations (Allele or Text)

v0.2.5: Merge pull request #123 from cancervariants/variation

• variant --> variation
• Fix validation checks on c. coordinates (previously did not include cds start)
• implement mane transcript instead of using Clin Gen Allele Registry API
• Add mane transcripts for silent mutations
• Get gene from genomic accession

0.2.4: Merge pull request #112 from cancervariants/issue-106

• Simple insertions for p./c./g. references