0.5.3

What's Changed

• refactor: replace AminoAcidCache with bioutils by @korikuzma in #366
• feat: add support for amplification queries (main) by @korikuzma in #367
• build(deps): bump starlette from 0.22.0 to 0.25.0 by @dependabot in #371
• build(deps): bump ipython from 8.9.0 to 8.10.0 by @dependabot in #370
• build: update dependencies by @korikuzma in #373
• fix: TypeError in _is_grch38_assembly by @korikuzma in #374
• feat: expose cool-seq-tool alignment mapper endpoints by @korikuzma in #380
• fix: add support for ambiguous N IUPAC code for cDNA + genomic by @korikuzma in #385
• feat: add support for amino acids after del by @korikuzma in #386
• refactor!: update cool-seq-tool by @korikuzma in #391

Full Changelog: v0.5.2...0.5.3

v0.5.2

What's Changed

• build!: replace uta tools with cool seq tool by @korikuzma in #340
• perf: gnomad vcf -> p will try mane transcript result first by @korikuzma in #343
• perf: gnomad_vcf_to_protein replace call to uta db with df lookup (main) by @korikuzma in #350
• build: unpin ga4gh.vrs + bump gene-normalizer (main) by @korikuzma in #351
• change: version by @korikuzma in #354
• fix: remove duplicate warnings in gnomad_vcf_to_protein by @korikuzma in #356

Full Changelog: v0.5.1...v0.5.2

v0.5.1

What's Changed

• Bump lxml from 4.9.0 to 4.9.1 by @dependabot in #305
• BREAKING CHANGE: refactor: simplify QueryHandler class by @korikuzma in #304
• docs: update readme for setting up backend services by @korikuzma in #306
• refactor!: main query methods return pydantic service class response by @korikuzma in #308
• refactor: update route descriptions by @korikuzma in #312
• refactor: service response by @korikuzma in #316
• build: update gene-normalizer to v.1.30 by @korikuzma in #338

Full Changelog: v0.4.0a7...v0.5.1

v0.7.dev0

What's Changed

• feat: add support for amplification queries by @korikuzma in #333

Full Changelog: v0.6.3...v0.7.dev0

v0.4.0a7: Merge pull request #302 from cancervariants/staging

• build: update uta tools + other dependencies
• fix: gnomad_vcf_to_protein getting ref/alt values

v0.4.0a6: Merge pull request #297 from cancervariants/staging

• feat: add endpoint for vrs-python _to_hgvs method

v0.4.0a5: Merge pull request #293 from cancervariants/staging

• Switch request body for /translate_to to use pydantic.BaseModel so users can test out the endpoint on the UI

v0.4.0a4: Merge pull request #290 from cancervariants/staging

• Add endpoint (/translate_to) for vrs-python's translate_to method

v0.4.0a3: Merge pull request #286 from cancervariants/issue-285

• Add parsed_to_abs_cnv endpoint to allow parsed ClinVar Copy Number Gain/Loss to be translated to VRS Absolute Copy Number variation

v0.4.0a2: Merge pull request #278 from cancervariants/staging

• Adds relative_cnv option to hgvs_dup_del_mode
  • Default characteristics for HGVS Dup Del Mode updated
• /to_canonical_variation parameters added
  • do_liftover: Whether or not to liftover 37 to 38
  • hgvs_dup_del_mode: Set to determine the VRS variation model used
    • baseline_copies is required when hgvs_dup_del_mode=absolute_cnv
    • relative_copy_class is optional when hgvs_dup_del_mode=relative_cnv