Skip to content

Releases: cancervariants/variation-normalization

v0.4.0a1: Merge pull request #275 from cancervariants/staging

12 Apr 18:55
a348e3f

Choose a tag to compare

  • CNVs use SequenceLocation as the subject
  • /toVRS --> /to_vrs
  • Add fastapi tags
  • Add initial /to_canonical_variation endpoint for HGVS/SPDI

v0.3.0: Merge pull request #259 from cancervariants/staging

04 Apr 17:40
edaa26a

Choose a tag to compare

  • HGVS to relative / absolute copy number endpoints
  • Remove unused methods from validator (human / concise description)
  • Use uta-tools to handle MANE transcript work

v0.2.22

30 Mar 12:19
69a233b

Choose a tag to compare

v0.2.22 Pre-release
Pre-release
  • Bump jupyter-server from 1.13.5 to 1.15.4

v0.2.21

07 Mar 17:47

Choose a tag to compare

v0.2.21 Pre-release
Pre-release
  • Add vrs-python's translate_from method (hgvs/spdi/beacon/gnomad --> VRS Allele object)

v0.2.20: Merge pull request #243 from cancervariants/staging

21 Feb 18:29
663dd1a

Choose a tag to compare

  • Adds dockerfile
  • Set variation descriptor's label to input query
  • Replace pandas.read_sql in uta data source
  • Add canonical spdi to categorical variation endpoint

v0.2.19: Merge pull request #238 from cancervariants/staging

03 Feb 18:16
73fc73c

Choose a tag to compare

  • Remove normalized MANE Transcript response from toVRS

v0.2.18: Merge pull request #233 from cancervariants/staging

02 Feb 14:06
e8a99e9

Choose a tag to compare

  • Removes unused hgvs.parser from validator + mane transcript
  • Fix bug in deletions state

v0.2.17: Merge pull request #227 from cancervariants/issue-226

27 Jan 14:53
09955ae

Choose a tag to compare

  • Add url to openapi contact info
  • Always enable Try it out param in FastAPI
  • Add citation
  • Update dependencies
    • sqlalchemy
    • psycopg2-binary (dev)

VICC Variation Normalization

23 Jan 18:30
a2f09b3

Choose a tag to compare

Pre-release

The January 2022 pre-release of the VICC variation normalization software, live instance available online at http://normalize.cancervariants.org/variation

v0.2.15

24 Dec 00:13
e89a9f8

Choose a tag to compare

v0.2.15 Pre-release
Pre-release
  • Catches ValueError when creating a sequence location whose namespace can't be inferred