Skip to content

Issues: elixir-europe/MARS

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 24 Closed
23 Open 24 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Create a MARS logo
#86 opened Nov 8, 2024 by bedroesb
Update main Readme and diagram documentation Improvements or additions to documentation
#85 opened Nov 8, 2024 by bedroesb
2 tasks
Clean up test-data and make sure all provided ISA-JSONs work
#84 opened Nov 8, 2024 by bedroesb
Alias in ISA-JSON is not the same as the one submitted to ENA mars-cli
#83 opened Nov 8, 2024 by bedroesb
Make password file support multiple password pairs mars-cli
#82 opened Nov 8, 2024 by bedroesb
Do we want to let Samples inherit Source material info to comply with the ENA minimal checklist? (collection date and geografical location) repository API service
#81 opened Nov 8, 2024 by bedroesb
ISA Investigation is being submitted as a ENA Study/Project repository API service
#80 opened Nov 8, 2024 by bedroesb
ENA Study accession is being dumped in the ISA Study - maybe better in the assay? mars-cli repository API service
#79 opened Nov 8, 2024 by bedroesb
Current data files parameter is not repository specific mars-cli
#78 opened Nov 8, 2024 by bedroesb
1
@kdp-cloud
assays > processSequence > parameterValues are not being parsed by the ENA endpoint repository API service
#73 opened Nov 7, 2024 by bedroesb
@dipayan1985
Repository API receipt error catching
#67 opened Nov 7, 2024 by bedroesb
@Pedram-A-Keyvani
Settle on accepted protocols / repository repository API service
#55 opened Nov 3, 2024 by bedroesb
Prepare RAW sequences as test data + Adapt the ISA-JSON
#53 opened Oct 21, 2024 by bedroesb
Implementation of JSONata for secondary validation enhancement New feature or request mars-cli
#51 opened Oct 10, 2024 by kdp-cloud
1
Make sure the ENA ISA JSON repository API accepts our test ISA JSON repository API service
#48 opened Sep 10, 2024 by bedroesb
2 tasks
BioSamples ISA JSON repository API needs to return a path like structure for its accessions repository API service
#46 opened Sep 10, 2024 by bedroesb
@Pedram-A-Keyvani
Take away BioHackathon mentions in code of BioSamples and ENA repository API service
#45 opened Aug 21, 2024 by bedroesb
BioSamples Repository services only accept ontology annotations.
#40 opened Jul 10, 2024 by xiaoranzhou
ISA RO-crate support enhancement New feature or request
#39 opened Jun 19, 2024 by kdp-cloud
Metadata validation prior to actual submission enhancement New feature or request mars-cli
#36 opened Jun 4, 2024 by kdp-cloud
Add healthcheck endpoint to repository API spec repository API service
#34 opened Apr 26, 2024 by apriltuesday
Filter ISA JSON mars-cli
#16 opened Apr 4, 2024 by bedroesb
@kdp-cloud
2
Include extra metadata for target repositories
#3 opened Feb 14, 2024 by kdp-cloud
ProTip! no:milestone will show everything without a milestone.