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IMPORTANT: Please search among the Pull requests before creating one.

Description

  • removes <3.0.0 constraint for the Zarr package (required for the incoming spatialdata release)
  • replaces a method that was deprecated in spatialdata and that will be removed in the incoming release

How has this been tested?

Subset of tests run locally (waiting for the CI tests to emit the status).

Closes

Closes #1039

@LucaMarconato
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Failing tests seem to be unrelated, since they appeared here #997.

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LucaMarconato commented Oct 2, 2025

All green! Can we merge? @timtreis

@LucaMarconato LucaMarconato merged commit 7a65810 into main Oct 7, 2025
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@LucaMarconato LucaMarconato deleted the zarrv3 branch October 7, 2025 16:08
selmanozleyen pushed a commit to selmanozleyen/squidpy that referenced this pull request Nov 3, 2025
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zarr v3 support

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