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Pull requests: nf-core/modules
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Fix fastq_create_umi_consensus_fgbio and swap to nf-test
#7718
opened Feb 28, 2025 by
SPPearce
•
Review required
Update version modules tcoffee to 13.46.1
#7498
opened Feb 19, 2025 by
luisas
•
Review required
17 tasks
gatk4/markduplicates - pipe uncompressed output to speed up CRAM writing
#7497
opened Feb 18, 2025 by
pontushojer
•
Draft
11 of 17 tasks
Add index format to samtools view
Ready for Review
#7481
opened Feb 14, 2025 by
fellen31
•
Review required
17 tasks
New
samtools/bgzip
module to produce BGZF-compressed files.
#7433
opened Feb 5, 2025 by
charles-plessy
•
Draft
17 tasks done
Move output format information to the first queue channel of
last/mafconvert
#7428
opened Feb 4, 2025 by
charles-plessy
•
Approved
17 tasks done
Update biocontainers/cooler Docker tag to v0.10.3
#7419
opened Feb 1, 2025 by
renovate
bot
•
Review required
2 tasks
Update biocontainers/cnvkit Docker tag to v0.9.12
#7418
opened Feb 1, 2025 by
renovate
bot
•
Review required
2 tasks
Add db to output meta object for diamond/blastp
#7403
opened Jan 30, 2025 by
erikrikarddaniel
•
Review required
2 of 17 tasks
index should be emitted as either tbi or csi
#7385
opened Jan 28, 2025 by
tkchafin
•
Review required
17 tasks
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