skrakau
Follow
-
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedApr 25, 2024 -
nf-co2footprint Public
Forked from nextflow-io/nf-co2footprintGroovy Apache License 2.0 UpdatedMar 19, 2024 -
website Public
Forked from nf-core/websiteCode and files for the main nf-core website.
Astro MIT License UpdatedFeb 27, 2024 -
plugins Public
Forked from nextflow-io/pluginsNextflow plugins index repository
UpdatedJan 19, 2024 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedJul 5, 2023 -
metapep Public
Forked from nf-core/metapepFrom metagenomes to epitopes and beyond
Nextflow MIT License UpdatedJul 4, 2023 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedJun 27, 2023 -
mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedMay 25, 2023 -
green-algorithms-tool Public
Forked from GreenAlgorithms/green-algorithms-toolPython Creative Commons Attribution 4.0 International UpdatedApr 18, 2023 -
pipeline-docs Public
Forked from qbic-pipelines/pipeline-docsDocs for QBiC pipelines
UpdatedFeb 10, 2023 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedFeb 9, 2023 -
PureCLIP Public
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
-
CAMISIM Public
Forked from CAMI-challenge/CAMISIMCAMISIM: Simulating metagenomes and microbial communities
Python Apache License 2.0 UpdatedJul 26, 2021 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMar 31, 2021 -
epitopeprediction Public
Forked from nf-core/epitopepredictionA bioinformatics best-practice analysis pipeline for epitope prediction and annotation
Python MIT License UpdatedSep 8, 2020 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedJul 2, 2020 -
Fred2 Public
Forked from FRED-2/Fred2Python-based framework for computational immunomics
Python UpdatedApr 30, 2020 -
mhcnuggets Public
Forked from KarchinLab/mhcnuggetsPublic facing repository for the MHCnuggets method
Python Apache License 2.0 UpdatedApr 14, 2020 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
Nextflow MIT License UpdatedMar 3, 2020 -
handle_RefSeq_data Public
Get sequence metadata for RefSeq release catalogue using Entrez, filter for top 3 assemblies for each taxa and download FASTAs
Python GNU General Public License v3.0 UpdatedNov 19, 2019 -
-
refseq_rollback Public
Forked from dnasko/refseq_rollbackA collection of scripts to recreate historical RefSeq versions
Perl GNU General Public License v3.0 UpdatedJan 12, 2019 -
tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedSep 8, 2018 -
sim_iCLIP Public
Simulation framework for iCLIP/eCLIP-seq data
-
clipper Public
Forked from YeoLab/clipperA tool to identify CLIP-seq peaks
Python UpdatedMay 31, 2017 -
-
CAMIKraken Public
Forked from dkoslicki/CAMIKrakenA Dockerfile and wrappers for the Kraken metagenomic classifier
Python UpdatedAug 17, 2015 -
knime_seqan_workflows Public
Forked from seqan/knime_seqan_workflowsKNIME example workflows for NGS data analysis with SeqAn apps.
UpdatedJun 10, 2014 -
-
seqan-mirror Public
Forked from rrahn/seqan-mirrorGit mirror for the SeqAn project.